Package index • RSVsim

All functions

RSVsim: RSVsim: A package for simulating Respiratory Synctial Virus (RSV) transmission.

RSVsim_MCMC(): Metropolis-Hastings Markov-chain Monte Carlo estimation of the b0, b1 and phi parameters from incidence data.

RSVsim_calibration_parameters(): Get parameters for the RSVsim_log_likelihood function from the data

RSVsim_contact_matrix(): Create contact matrix for RSVsim

RSVsim_log_likelihood_dust(): Calculate the likelihood of observing incidence data given the model outputs

RSVsim_max_likelihood_dust(): Constrained maximum-likelihood estimation of the b0, b1 and phi parameters from incidence data.

RSVsim_parameters(): Get parameters for RSVsim

RSVsim_run_model(): Runs the RSV model using Stan

RSVsim_run_model_dust(): Runs the RSV model using odin and dust